| Mouse MEF cells |
Mouse embryonic fibroblasts
|
| References |
Quantitative profiling of initiating ribosomes in vivo
|
| Authors |
Gao, X., Wan, J., Liu, B., Ming, M., Shen, B., Qian, S.B.
|
| link to data |
SRA160745 |
treatment type |
pre-lysis cycloheximide treatment |
nuclease used: |
RNase I |
|
total number of reads (CHX/EM sample)
|
reads mapped to rRNA (CHX/EM sample)
|
reads mapped to tRNA (CHX/EM sample)
|
reads mapped to snRNA/snoRNA (CHX/EM sample)
|
reads mapped to genomix(% total number of reads)
|
|
72355694
|
16362945
|
94743
|
2372004
|
40213120
(55.58%)
|
|
Total number of reads (HARR/LTM sample)
|
reads mapped to rRNA (HARR/LTM sample)
|
reads mapped to tRNA (HARR/LTM sample)
|
reads mapped to snRNA/snoRNA (HARR/LTM sample)
|
reads mapped to genomix(% total number of reads)
|
|
57007658
|
46958497
|
5544
|
340985
|
6283638
(11.02%)
|
FastQC quality control CHX/EM data (no rRNA/tRNA/snRNA/snoRNA)
FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data.
Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data.
source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
FastQC quality control CHX/EM
|
FastQC quality control HARR/LTM data (no rRNA/tRNA/snRNA/snoRNA)
FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data.
Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data.
source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
FastQC quality control CHX/EM
|