| breast |
human epihelial breast cells (MCF10A)
|
| References |
Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins
|
| Authors |
Ji Z.,Song R.,Regev A.,Struhl K.
|
| SRA accession |
SRP054971 |
treatment type |
pre-lysis cycloheximide treatment |
nuclease used: |
RNase I |
|
total number of reads (CHX/EM sample)
|
reads mapped to rRNA (CHX/EM sample)
|
reads mapped to tRNA (CHX/EM sample)
|
reads mapped to snRNA/snoRNA (CHX/EM sample)
|
reads mapped to genomix(% total number of reads)
|
|
245363147
|
206822590
|
720523
|
654436
|
31709138
(12.92%)
|
|
Total number of reads (HARR/LTM sample)
|
reads mapped to rRNA (HARR/LTM sample)
|
reads mapped to tRNA (HARR/LTM sample)
|
reads mapped to snRNA/snoRNA (HARR/LTM sample)
|
reads mapped to genomix(% total number of reads)
|
|
56961251
|
54866679
|
42122
|
80512
|
1500664
(2.63%)
|
FastQC quality control CHX/EM data (no rRNA/tRNA/snRNA/snoRNA)
FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data.
Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data.
source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
FastQC quality control CHX/EM
|
FastQC quality control HARR/LTM data (no rRNA/tRNA/snRNA/snoRNA)
FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data.
Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data.
source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
FastQC quality control CHX/EM
|