| MEF |
Mouse embryonic fibroblasts
|
| References |
Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.
|
| Authors |
Lee S, Liu B, Lee S, Huang SX, Shen B, Qian SB.
|
| GEO accession |
SRA056377 |
treatment type |
pre-lysis cycloheximide treatment |
nuclease used: |
RNase I |
|
total number of reads (CHX/EM sample)
|
reads mapped to rRNA (CHX/EM sample)
|
reads mapped to tRNA (CHX/EM sample)
|
reads mapped to snRNA/snoRNA (CHX/EM sample)
|
reads mapped to genomix(% total number of reads)
|
|
14444521
|
9409583
|
46380
|
162256
|
3321949
(23.00%)
|
|
Total number of reads (HARR/LTM sample)
|
reads mapped to rRNA (HARR/LTM sample)
|
reads mapped to tRNA (HARR/LTM sample)
|
reads mapped to snRNA/snoRNA (HARR/LTM sample)
|
reads mapped to genomix(% total number of reads)
|
|
42809237
|
36673926
|
1436
|
922993
|
2349955
(5.49%)
|
FastQC quality control CHX/EM data (no rRNA/tRNA/snRNA/snoRNA)
FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data.
Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data.
source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
FastQC quality control CHX/EM
|
FastQC quality control HARR/LTM data (no rRNA/tRNA/snRNA/snoRNA)
FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines.
FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data.
Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data.
source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
|
FastQC quality control CHX/EM
|