sORFs.org: repository of small ORFs identified by ribosome profiling

sORFs.org datasets. This section provides detailed information about the datasets used. For more information about the dataset processing please consult the INFO page. navigate through the datasets on the left to acquire more information about the corresponding dataset.

loayza_puch_2013

BJ	Human skin fibroblasts
References	p53 induces transcriptional and translational programs to suppress cell proliferation and growth.
Authors	Loayza-Puch F, Drost J, Rooijers K, Lopes R, Elkon R, Agami R.
GEO accession	GSE45833
treatment type	post-lysis cycloheximide treatment		nuclease used:	RNase I
total number of reads (CHX/EM sample)	reads mapped to rRNA (CHX/EM sample)	reads mapped to tRNA (CHX/EM sample)	reads mapped to snRNA/snoRNA (CHX/EM sample)	reads mapped to genomix(% total number of reads)
1852547613	1596792835	20789316	12222181	125532206 (6.78%)
FastQC quality control CHX/EM data (no rRNA/tRNA/snRNA/snoRNA) FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines. FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data. Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data. source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/		FastQC quality control CHX/EM