sORFs.org: repository of small ORFs identified by ribosome profiling

sORFs.org datasets. This section provides detailed information about the datasets used. For more information about the dataset processing please consult the INFO page. navigate through the datasets on the left to acquire more information about the corresponding dataset.

Shi 2017

Hela	Human immortalized cell line
References	YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA. .
Authors	Shi H, Wang X, Lu Z, Zhao BS, Ma H, Hsu PJ, Liu C, He C
GEO	GSE86214
treatment type	pre-lysis cycloheximide treatment		nuclease used:	RNase I
total number of reads (CHX/EM sample)	reads mapped to rRNA (CHX/EM sample)	reads mapped to tRNA (CHX/EM sample)	reads mapped to snRNA/snoRNA (CHX/EM sample)	reads mapped to genomix(% total number of reads)
122190772	117913505	525589	386460	2079007 (1.70%)
FastQC quality control CHX/EM data (no rRNA/tRNA/snRNA/snoRNA) FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines. FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data. Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data. source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/		FastQC quality control CHX/EM