sORFs.org: repository of small ORFs identified by ribosome profiling

sORFs.org datasets. This section provides detailed information about the datasets used. For more information about the dataset processing please consult the INFO page. navigate through the datasets on the left to acquire more information about the corresponding dataset.

zur_2016

HeLa	Immortal human cervical cancer cell line				References	Complementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling.
Authors	Zur H, Aviner R, Tuller T
GEO accession	GSE73565
treatment type	pre-lysis cycloheximide treatment		nuclease used:	RNase 1
total number of reads (CHX/EM sample)	reads mapped to rRNA (CHX/EM sample)	reads mapped to tRNA (CHX/EM sample)	reads mapped to snRNA/snoRNA (CHX/EM sample)	reads mapped to genomix(% total number of reads)
353869147	200269977	18597520	37201263	90478642 (25.57%)
FastQC quality control CHX/EM data (no rRNA/tRNA/snRNA/snoRNA) FastQC provides quality control checks on raw sequence data coming from high throughput sequencing pipelines. FastQC provides a modular set of analyses which can be used to give a quick impression on the quality and potential problems of the data. Prior to the FastQC analysis, rRNA, tRNA, snRNA & snoRNA were removed from the data. source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/		FastQC quality control CHX/EM