Basic Statistics
Measure | Value |
---|---|
Filename | fastq1_norrna_nosnrna_notrna.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 67257554 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGATCTCCGATAGGCCCCGGGTAACCGGGAAGATCGGAAGAGCACACGTC | 386714 | 0.5749748199287771 | No Hit |
AAGGGTCAGGGGGCGAAGGTGGCCCGTCGGAGATCGGAAGAGCACACGTC | 327923 | 0.4875630773013244 | No Hit |
TCTCCGATAGGCCCCGGGTAACCGGGAAGATCGGAAGAGCACACGTCTGA | 158009 | 0.23493123166507066 | Illumina Multiplexing PCR Primer 2.01 (100% over 23bp) |
AGGGTCAGGGGGCGAAGGTGGCCCGTCGGAGATCGGAAGAGCACACGTCT | 100524 | 0.14946127835692627 | Illumina Multiplexing PCR Primer 2.01 (100% over 21bp) |
AGCCCGCGGACGGTGTGAGGCCGGTGTCGAGATCGGAAGAGCACACGTCT | 92946 | 0.1381941424750594 | Illumina Multiplexing PCR Primer 2.01 (100% over 21bp) |
CGAACCATCTAGTAGCTGGTTCCCTCCGAAGAGATCGGAAGAGCACACGT | 77174 | 0.11474398845964574 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACGACC | 17880 | 0.0 | 64.858116 | 1 |
CGGATCT | 64490 | 0.0 | 64.173874 | 1 |
AGCCCGC | 66175 | 0.0 | 61.618393 | 1 |
TCCGCGC | 128775 | 0.0 | 58.49117 | 25 |
CCGCGCA | 64975 | 0.0 | 57.77934 | 26 |
CGCGCCA | 44865 | 0.0 | 57.729626 | 27 |
TGCCCGC | 8380 | 0.0 | 56.347702 | 1 |
CTCCGCG | 177530 | 0.0 | 55.852 | 24 |
CCTCCGC | 183425 | 0.0 | 55.794205 | 23 |
ACGCGAC | 3305 | 0.0 | 55.627777 | 4 |
CTGCTTG | 148365 | 0.0 | 55.40085 | 58 |
TGCTTGA | 148780 | 0.0 | 55.302677 | 59 |
GCTTGAA | 149000 | 0.0 | 55.19992 | 60 |
CTTCTGC | 149295 | 0.0 | 55.05106 | 55 |
TCTGCTT | 149635 | 0.0 | 54.970337 | 57 |
AACGATT | 7780 | 0.0 | 54.95848 | 1 |
TTCTGCT | 149755 | 0.0 | 54.902958 | 56 |
GTCTTCT | 149670 | 0.0 | 54.809757 | 53 |
AGCGCCG | 498995 | 0.0 | 54.76185 | 1 |
CCCCCTG | 20685 | 0.0 | 54.391357 | 1 |